Detailed information of SNP:
|
SNP ID:
sf0918094325(Gbrowse)
Chromosome: chr09 Position: 18094325 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 66.08% | 33.92% |
| All Indica | 798 | 94.86% | 5.14% |
| All Japonica | 497 | 16.50% | 83.50% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 23.88% | 76.12% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918094325 | T->C | INTERGENIC | None |