Detailed information of SNP:
|
SNP ID:
sf0918153445(Gbrowse)
Chromosome: chr09 Position: 18153445 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 91.25% | 8.75% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 496 | 84.88% | 15.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918153445 | T->C | LOC_Os09g29840(LOC_Os09g29840.2) | INTRON |
| sf0918153445 | T->C | LOC_Os09g29840(LOC_Os09g29840.1) | INTRON |