Detailed information of SNP:
|
SNP ID:
sf0918157743(Gbrowse)
Chromosome: chr09 Position: 18157743 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 92.87% | 7.13% |
| All Indica | 754 | 87.14% | 12.86% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 350 | 79.14% | 20.86% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 195 | 90.26% | 9.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918157743 | C->T | INTERGENIC | None |