Detailed information of SNP:
|
SNP ID:
sf0918158852(Gbrowse)
Chromosome: chr09 Position: 18158852 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.67% | 41.33% |
| All Indica | 798 | 92.23% | 7.77% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918158852 | A->G | LOC_Os09g29860(LOC_Os09g29860.1) | Synonymous |