Detailed information of SNP:
|
SNP ID:
sf0918170291(Gbrowse)
Chromosome: chr09 Position: 18170291 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.76% | 41.24% |
| All Indica | 798 | 92.11% | 7.89% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918170291 | T->C | INTERGENIC | None |