Detailed information of SNP:
|
SNP ID:
sf0918184650(Gbrowse)
Chromosome: chr09 Position: 18184650 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 81.45% | 18.55% |
| All Indica | 787 | 69.38% | 30.62% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 368 | 58.97% | 41.03% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 206 | 65.05% | 34.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918184650 | C->T | INTERGENIC | None |