Detailed information of SNP:
|
SNP ID:
sf0918197006(Gbrowse)
Chromosome: chr09 Position: 18197006 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.17% | 43.83% |
| All Indica | 799 | 33.92% | 66.08% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 47.20% | 52.80% |
| Indica II | 213 | 8.92% | 91.08% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918197006 | C->A | INTERGENIC | None |