Detailed information of SNP:
|
SNP ID:
sf0918203236(Gbrowse)
Chromosome: chr09 Position: 18203236 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.82% | 44.18% |
| All Indica | 799 | 33.42% | 66.58% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 46.40% | 53.60% |
| Indica II | 213 | 8.92% | 91.08% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918203236 | A->G | INTERGENIC | None |