Detailed information of SNP:
|
SNP ID:
sf0918216540(Gbrowse)
Chromosome: chr09 Position: 18216540 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 88.37% | 11.63% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918216540 | G->T | LOC_Os09g29940(LOC_Os09g29940.1) | UTR_3_PRIME |
| sf0918216540 | G->T | LOC_Os09g29940(LOC_Os09g29940.2) | UTR_3_PRIME |