Detailed information of SNP:
|
SNP ID:
sf0918220604(Gbrowse)
Chromosome: chr09 Position: 18220604 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 91.39% | 8.61% |
| All Indica | 796 | 99.75% | 0.25% |
| All Japonica | 465 | 75.91% | 24.09% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 312 | 76.60% | 23.40% |
| Tropical Japonica | 92 | 80.43% | 19.57% |
| Japonica Intermediate | 61 | 65.57% | 34.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918220604 | G->A | INTERGENIC | None |