Detailed information of SNP:
|
SNP ID:
sf0918234837(Gbrowse)
Chromosome: chr09 Position: 18234837 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1307 | 87.30% | 12.70% |
| All Indica | 795 | 98.36% | 1.64% |
| All Japonica | 392 | 63.78% | 36.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 255 | 52.94% | 47.06% |
| Tropical Japonica | 82 | 87.80% | 12.20% |
| Japonica Intermediate | 55 | 78.18% | 21.82% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918234837 | A->T | LOC_Os09g29960(LOC_Os09g29960.1) | UTR_3_PRIME |