Detailed information of SNP:
|
SNP ID:
sf0918267131(Gbrowse)
Chromosome: chr09 Position: 18267131 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 97.52% | 2.48% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 452 | 92.70% | 7.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 318 | 99.69% | 0.31% |
| Tropical Japonica | 82 | 63.41% | 36.59% |
| Japonica Intermediate | 52 | 96.15% | 3.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918267131 | C->T | INTERGENIC | None |