Detailed information of SNP:
|
SNP ID:
sf0918358049(Gbrowse)
Chromosome: chr09 Position: 18358049 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 78.85% | 21.15% |
| All Indica | 795 | 65.16% | 34.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 373 | 53.08% | 46.92% |
| Indica II | 212 | 87.74% | 12.26% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918358049 | A->G | INTERGENIC | None |