Detailed information of SNP:
|
SNP ID:
sf0918373001(Gbrowse)
Chromosome: chr09 Position: 18373001 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 78.77% | 21.23% |
| All Indica | 798 | 64.66% | 35.34% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 52.67% | 47.33% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918373001 | T->C | INTERGENIC | None |