Detailed information of SNP:
|
SNP ID:
sf0918466470(Gbrowse)
Chromosome: chr09 Position: 18466470 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1342 | 95.68% | 4.32% |
| All Indica | 723 | 92.25% | 7.75% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 340 | 88.53% | 11.47% |
| Indica II | 187 | 96.79% | 3.21% |
| Indica Intermediate | 196 | 94.39% | 5.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918466470 | T->C | LOC_Os09g30330(LOC_Os09g30330.1) | INTRON |