Detailed information of SNP:
|
SNP ID:
sf0918486265(Gbrowse)
Chromosome: chr09 Position: 18486265 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.02% | 45.98% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 19.51% | 80.49% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918486265 | T->C | INTERGENIC | None |