Detailed information of SNP:
|
SNP ID:
sf0918510303(Gbrowse)
Chromosome: chr09 Position: 18510303 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.91% | 43.09% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 496 | 5.24% | 94.76% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 6.57% | 93.43% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 23.81% | 76.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918510303 | A->G | INTERGENIC | None |