Detailed information of SNP:
|
SNP ID:
sf0918541687(Gbrowse)
Chromosome: chr09 Position: 18541687 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.14% | 43.86% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 31.71% | 68.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918541687 | T->C | INTERGENIC | None |