Detailed information of SNP:
|
SNP ID:
sf0918587321(Gbrowse)
Chromosome: chr09 Position: 18587321 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 53.04% | 46.96% |
| All Indica | 794 | 93.20% | 6.80% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 372 | 91.94% | 8.06% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 19.05% | 80.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918587321 | A->C | INTERGENIC | None |