Detailed information of SNP:
|
SNP ID:
sf0918588963(Gbrowse)
Chromosome: chr09 Position: 18588963 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.83% | 48.17% |
| All Indica | 799 | 90.61% | 9.39% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 21.95% | 78.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918588963 | G->T | INTERGENIC | None |