Detailed information of SNP:
|
SNP ID:
sf0918590035(Gbrowse)
Chromosome: chr09 Position: 18590035 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 52.08% | 47.92% |
| All Indica | 788 | 90.10% | 9.90% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 56 | 3.57% | 96.43% |
| Indica I | 371 | 89.76% | 10.24% |
| Indica II | 207 | 89.86% | 10.14% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 38 | 26.32% | 73.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918590035 | T->C | INTERGENIC | None |