Detailed information of SNP:
|
SNP ID:
sf0918590038(Gbrowse)
Chromosome: chr09 Position: 18590038 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 51.03% | 48.97% |
| All Indica | 797 | 88.21% | 11.79% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 58 | 3.45% | 96.55% |
| Indica I | 373 | 86.60% | 13.40% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 38 | 26.32% | 73.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918590038 | C->T | INTERGENIC | None |