Detailed information of SNP:
|
SNP ID:
sf0918592582(Gbrowse)
Chromosome: chr09 Position: 18592582 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 55.41% | 44.59% |
| All Indica | 775 | 20.77% | 79.23% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 22.65% | 77.35% |
| Indica II | 207 | 16.43% | 83.57% |
| Indica Intermediate | 206 | 21.84% | 78.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918592582 | A->G | INTERGENIC | None |