Detailed information of SNP:
|
SNP ID:
sf0918645539(Gbrowse)
Chromosome: chr09 Position: 18645539 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 53.23% | 46.77% |
| All Indica | 776 | 92.40% | 7.60% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 361 | 93.07% | 6.93% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 204 | 91.67% | 8.33% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 25.00% | 75.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918645539 | C->T | INTERGENIC | None |