Detailed information of SNP:
|
SNP ID:
sf0918670170(Gbrowse)
Chromosome: chr09 Position: 18670170 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 66.46% | 33.54% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918670170 | C->T | LOC_Os09g31031(LOC_Os09g31031.2) | INTRON |
| sf0918670170 | C->T | LOC_Os09g31031(LOC_Os09g31031.1) | INTRON |
| sf0918670170 | C->T | LOC_Os09g31031(LOC_Os09g31031.3) | UTR_3_PRIME |