Detailed information of SNP:
|
SNP ID:
sf0918693679(Gbrowse)
Chromosome: chr09 Position: 18693679 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 55.86% | 44.14% |
| All Indica | 798 | 95.86% | 4.14% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 25.00% | 75.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918693679 | C->A | INTERGENIC | None |