Detailed information of SNP:
|
SNP ID:
sf0918700887(Gbrowse)
Chromosome: chr09 Position: 18700887 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 63.60% | 36.40% |
| All Indica | 797 | 97.11% | 2.89% |
| All Japonica | 495 | 6.46% | 93.54% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 333 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918700887 | A->G | LOC_Os09g31100(LOC_Os09g31100.1) | Non-Synonymous SNP |