Detailed information of SNP:
|
SNP ID:
sf0918725676(Gbrowse)
Chromosome: chr09 Position: 18725676 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 94.32% | 5.68% |
| All Indica | 769 | 92.46% | 7.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 54 | 66.67% | 33.33% |
| Indica I | 362 | 93.65% | 6.35% |
| Indica II | 206 | 91.26% | 8.74% |
| Indica Intermediate | 201 | 91.54% | 8.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918725676 | G->A | INTERGENIC | None |