Detailed information of SNP:
|
SNP ID:
sf0918773898(Gbrowse)
Chromosome: chr09 Position: 18773898 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 89.28% | 10.72% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 488 | 70.90% | 29.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 327 | 76.76% | 23.24% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918773898 | A->T | INTERGENIC | None |