Detailed information of SNP:
|
SNP ID:
sf0918786679(Gbrowse)
Chromosome: chr09 Position: 18786679 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 65.30% | 34.70% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 495 | 16.36% | 83.64% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 333 | 6.31% | 93.69% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918786679 | T->A | LOC_Os09g31230(LOC_Os09g31230.2) | INTRON |
| sf0918786679 | T->A | LOC_Os09g31230(LOC_Os09g31230.1) | INTRON |