Detailed information of SNP:
|
SNP ID:
sf0918826520(Gbrowse)
Chromosome: chr09 Position: 18826520 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1312 | 53.96% | 46.04% |
| All Indica | 737 | 94.30% | 5.70% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 29 | 10.34% | 89.66% |
| Indica I | 323 | 94.74% | 5.26% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 35 | 25.71% | 74.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918826520 | G->A | INTERGENIC | None |