Detailed information of SNP:
|
SNP ID:
sf0918842192(Gbrowse)
Chromosome: chr09 Position: 18842192 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1317 | 95.06% | 4.94% |
| All Indica | 743 | 92.46% | 7.54% |
| All Japonica | 484 | 99.38% | 0.62% |
| Aus | 42 | 88.10% | 11.90% |
| Indica I | 333 | 90.09% | 9.91% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 204 | 95.10% | 4.90% |
| Temperate Japonica | 325 | 99.38% | 0.62% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 97.06% | 2.94% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918842192 | T->A | INTERGENIC | None |