Detailed information of SNP:
|
SNP ID:
sf0918875795(Gbrowse)
Chromosome: chr09 Position: 18875795 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 93.57% | 6.43% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 496 | 90.93% | 9.07% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 334 | 88.62% | 11.38% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918875795 | A->G | LOC_Os09g31390(LOC_Os09g31390.2) | INTRON |
| sf0918875795 | A->G | LOC_Os09g31390(LOC_Os09g31390.1) | INTRON |