Detailed information of SNP:
|
SNP ID:
sf0918876233(Gbrowse)
Chromosome: chr09 Position: 18876233 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 94.64% | 5.36% |
| All Indica | 742 | 90.30% | 9.70% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 350 | 85.14% | 14.86% |
| Indica II | 192 | 96.35% | 3.65% |
| Indica Intermediate | 200 | 93.50% | 6.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918876233 | G->A | LOC_Os09g31390(LOC_Os09g31390.2) | UTR_5_PRIME |
| sf0918876233 | G->A | LOC_Os09g31390(LOC_Os09g31390.1) | UTR_5_PRIME |