Detailed information of SNP:
|
SNP ID:
sf0918881956(Gbrowse)
Chromosome: chr09 Position: 18881956 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1302 | 58.29% | 41.71% |
| All Indica | 795 | 89.56% | 10.44% |
| All Japonica | 420 | 4.76% | 95.24% |
| Aus | 45 | 24.44% | 75.56% |
| Indica I | 374 | 84.22% | 15.78% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 279 | 3.58% | 96.42% |
| Tropical Japonica | 84 | 8.33% | 91.67% |
| Japonica Intermediate | 57 | 5.26% | 94.74% |
| Group VI/Aromatic | 6 | 50.00% | 50.00% |
| Intermediate | 36 | 36.11% | 63.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918881956 | T->A | LOC_Os09g31400(LOC_Os09g31400.1) | UTR_3_PRIME |