Detailed information of SNP:
|
SNP ID:
sf0918885513(Gbrowse)
Chromosome: chr09 Position: 18885513 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 78.62% | 21.38% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 463 | 41.25% | 58.75% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 307 | 36.48% | 63.52% |
| Tropical Japonica | 91 | 53.85% | 46.15% |
| Japonica Intermediate | 65 | 46.15% | 53.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918885513 | T->C | INTERGENIC | None |