Detailed information of SNP:
|
SNP ID:
sf0918889433(Gbrowse)
Chromosome: chr09 Position: 18889433 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 93.79% | 6.21% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 483 | 83.02% | 16.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 87 | 39.08% | 60.92% |
| Japonica Intermediate | 64 | 62.50% | 37.50% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918889433 | T->A | LOC_Os09g31410(LOC_Os09g31410.2) | INTRON |
| sf0918889433 | T->A | LOC_Os09g31410(LOC_Os09g31410.1) | INTRON |