Detailed information of SNP:
|
SNP ID:
sf0918898144(Gbrowse)
Chromosome: chr09 Position: 18898144 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.53% | 46.47% |
| All Indica | 798 | 89.85% | 10.15% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918898144 | T->C | INTERGENIC | None |