Detailed information of SNP:
|
SNP ID:
sf0918905558(Gbrowse)
Chromosome: chr09 Position: 18905558 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1292 | 71.36% | 28.64% |
| All Indica | 794 | 97.98% | 2.02% |
| All Japonica | 378 | 21.96% | 78.04% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 208 | 97.60% | 2.40% |
| Temperate Japonica | 243 | 26.34% | 73.66% |
| Tropical Japonica | 80 | 5.00% | 95.00% |
| Japonica Intermediate | 55 | 27.27% | 72.73% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918905558 | A->T | LOC_Os09g31430(LOC_Os09g31430.2) | Non-Synonymous SNP |
| sf0918905558 | A->T | LOC_Os09g31430(LOC_Os09g31430.1) | Non-Synonymous SNP |