Detailed information of SNP:
|
SNP ID:
sf0918911349(Gbrowse)
Chromosome: chr09 Position: 18911349 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 50.07% | 49.93% |
| All Indica | 792 | 87.37% | 12.63% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 369 | 82.11% | 17.89% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 23.81% | 76.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918911349 | G->A | INTERGENIC | None |