Detailed information of SNP:
|
SNP ID:
sf0918911379(Gbrowse)
Chromosome: chr09 Position: 18911379 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1153 | 64.27% | 35.73% |
| All Indica | 555 | 29.37% | 70.63% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 51 | 80.39% | 19.61% |
| Indica I | 248 | 26.61% | 73.39% |
| Indica II | 158 | 32.91% | 67.09% |
| Indica Intermediate | 149 | 30.20% | 69.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 77.78% | 22.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918911379 | C->T | INTERGENIC | None |