Detailed information of SNP:



SNP ID: sf0918917596(Gbrowse)

Chromosome: chr09

Position: 18917596
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 99.30% 0.70%
All Indica799 100.00% 0.00%
All Japonica497 98.19% 1.81%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 90.43% 9.57%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0918917596 C->T LOC_Os09g31438(LOC_Os09g31438.1) Non-Synonymous SNP