Detailed information of SNP:
|
SNP ID:
sf0918922523(Gbrowse)
Chromosome: chr09 Position: 18922523 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 78.62% | 21.38% |
| All Indica | 798 | 67.92% | 32.08% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 80.53% | 19.47% |
| Indica II | 213 | 37.09% | 62.91% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918922523 | G->A | INTERGENIC | None |