Detailed information of SNP:
|
SNP ID:
sf0918922624(Gbrowse)
Chromosome: chr09 Position: 18922624 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 61.70% | 38.30% |
| All Indica | 797 | 35.63% | 64.37% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 70.77% | 29.23% |
| Indica I | 375 | 20.80% | 79.20% |
| Indica II | 212 | 69.81% | 30.19% |
| Indica Intermediate | 210 | 27.62% | 72.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918922624 | C->T | INTERGENIC | None |