Detailed information of SNP:
|
SNP ID:
sf0918922865(Gbrowse)
Chromosome: chr09 Position: 18922865 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 53.32% | 46.68% |
| All Indica | 796 | 26.76% | 73.24% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 6.13% | 93.87% |
| Indica II | 212 | 68.40% | 31.60% |
| Indica Intermediate | 209 | 21.53% | 78.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918922865 | C->A | INTERGENIC | None |