Detailed information of SNP:
|
SNP ID:
sf0918926566(Gbrowse)
Chromosome: chr09 Position: 18926566 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 76.65% | 23.35% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 417 | 36.69% | 63.31% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 287 | 28.22% | 71.78% |
| Tropical Japonica | 72 | 62.50% | 37.50% |
| Japonica Intermediate | 58 | 46.55% | 53.45% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918926566 | T->C | INTERGENIC | None |