Detailed information of SNP:
|
SNP ID:
sf0918927440(Gbrowse)
Chromosome: chr09 Position: 18927440 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1248 | 96.39% | 3.61% |
| All Indica | 736 | 97.69% | 2.31% |
| All Japonica | 411 | 94.65% | 5.35% |
| Aus | 53 | 98.11% | 1.89% |
| Indica I | 349 | 98.57% | 1.43% |
| Indica II | 194 | 98.45% | 1.55% |
| Indica Intermediate | 193 | 95.34% | 4.66% |
| Temperate Japonica | 280 | 92.86% | 7.14% |
| Tropical Japonica | 73 | 98.63% | 1.37% |
| Japonica Intermediate | 58 | 98.28% | 1.72% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 34 | 97.06% | 2.94% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918927440 | C->T | INTERGENIC | None |