Detailed information of SNP:
|
SNP ID:
sf0918930136(Gbrowse)
Chromosome: chr09 Position: 18930136 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.66% | 25.34% |
| All Indica | 797 | 64.74% | 35.26% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 211 | 34.12% | 65.88% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918930136 | G->T | INTERGENIC | None |