Detailed information of SNP:
|
SNP ID:
sf0918935020(Gbrowse)
Chromosome: chr09 Position: 18935020 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 75.11% | 24.89% |
| All Indica | 799 | 64.46% | 35.54% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 31.46% | 68.54% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918935020 | C->T | INTERGENIC | None |