Detailed information of SNP:
|
SNP ID:
sf0918947219(Gbrowse)
Chromosome: chr09 Position: 18947219 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.66% | 42.34% |
| All Indica | 798 | 95.24% | 4.76% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0918947219 | G->A | INTERGENIC | None |